<?xml version='1.0' encoding='UTF-8'?><?xml-stylesheet href="http://www.blogger.com/styles/atom.css" type="text/css"?><entry xmlns='http://www.w3.org/2005/Atom' xmlns:georss='http://www.georss.org/georss' xmlns:thr='http://purl.org/syndication/thread/1.0'><id>tag:blogger.com,1999:blog-2695693265049490064.post-6218240521827514744</id><published>2008-05-27T06:43:00.000-07:00</published><updated>2008-05-27T07:01:40.241-07:00</updated><category scheme='http://www.blogger.com/atom/ns#' term='Review'/><category scheme='http://www.blogger.com/atom/ns#' term='Diagnostics'/><category scheme='http://www.blogger.com/atom/ns#' term='Sexually Transmitted Disease'/><category scheme='http://www.blogger.com/atom/ns#' term='Microbiology'/><category scheme='http://www.blogger.com/atom/ns#' term='Molecular biology'/><title type='text'>The Swedish Chlamydia Mystery</title><content type='html'>&lt;span style="float: right; padding: 5px;"&gt;&lt;a href="http://www.researchblogging.org"&gt;&lt;img alt="ResearchBlogging.org" src="http://www.researchblogging.org/images/rbicons/ResearchBlogging-Medium-White.png" width="80" height="50" /&gt;&lt;/a&gt;&lt;/span&gt;&lt;br /&gt;&lt;br /&gt;&lt;span style="font-family:times new roman;"&gt;Authors: Nils Reinton and Amir Moghaddam&lt;br /&gt;&lt;/span&gt;&lt;span style="font-family:times new roman;"&gt;Furst Medical Laboratory, Søren Bullsv. 25, N-1051 Oslo, Norway (nreinton_at_furst.no)&lt;br /&gt;&lt;br /&gt;&lt;/span&gt;&lt;span style="font-family:times new roman;"&gt;In 2006, Swedish researchers noticed a peculiar trend in the number of positive &lt;/span&gt;&lt;span style="font-style: italic;font-family:times new roman;" &gt;Chlamydia trachomatis&lt;/span&gt;&lt;span style="font-family:times new roman;"&gt; cases. The number of infected patients was down by as much as 25 %. This was unexpected since there had been no public health (or preventive medical) actions to explain such a drastic decrease. Also, the numbers tested for &lt;/span&gt;&lt;span style="font-style: italic;font-family:times new roman;" &gt;C.trachomatis &lt;/span&gt;&lt;span style="font-family:times new roman;"&gt;was similar to previous years. In addition, this trend had not been observed anywhere else. Something strange was happening to sexually active individuals in Sweden in particular.&lt;/span&gt; &lt;span style="font-family:times new roman;"&gt;&lt;br /&gt;&lt;br /&gt;The reason they found, was not due to calculation error or changes in sexual habits, but in molecular diagnostics, or more precisely, the genetic flexibility of &lt;/span&gt;&lt;span style="font-style: italic;font-family:times new roman;" &gt;C.trachomatis &lt;/span&gt;&lt;span style="font-family:times new roman;"&gt; (&lt;/span&gt;&lt;a style="font-family: times new roman;" href="http://www.eurosurveillance.org/ew/2006/061109.asp#2"&gt;1&lt;/a&gt;&lt;span style="font-family:times new roman;"&gt;).&lt;/span&gt;&lt;span style="font-family:times new roman;"&gt; A genetic change had appeared&lt;/span&gt;&lt;span style="font-family:times new roman;"&gt; creating a novel strain that was given the name "nv&lt;/span&gt;&lt;span style="font-style: italic;font-family:times new roman;" &gt;C.trachomatis&lt;/span&gt;&lt;span style="font-family:times new roman;"&gt;.". This strain had a deletion in its "cryptic plasmid". The deletion was situated in the middle of the target sequence used by diagnostic kits from Abbott and Roche. Consequently, labs using kits from these suppliers (almost everyone in Sweden were using Roche) would misdiagnose any patient infected with the variant as negative for &lt;/span&gt;&lt;span style="font-style: italic;font-family:times new roman;" &gt;C.trachomatis &lt;/span&gt;&lt;span style="font-style: italic;font-family:times new roman;" &gt; &lt;/span&gt;&lt;span style="font-family:times new roman;"&gt;infection&lt;/span&gt;&lt;span style="font-family:times new roman;"&gt;. As a consequence of a diagnostics driven selection pressure, nv&lt;/span&gt;&lt;span style="font-style: italic;font-family:times new roman;" &gt;C.trachomatis &lt;/span&gt;&lt;span style="font-family:times new roman;"&gt; may have reached almost 40 % of total &lt;/span&gt;&lt;span style="font-style: italic;font-family:times new roman;" &gt;C.trachomatis &lt;/span&gt;&lt;span style="font-family:times new roman;"&gt; infections in Sweden (&lt;/span&gt;&lt;a style="font-family: times new roman;" href="http://www.eurosurveillance.org/ew/2006/061207.asp#1"&gt;2&lt;/a&gt;&lt;span style="font-family:times new roman;"&gt;). Numbers as high as 78 % were reported in some Swedish counties (&lt;/span&gt;&lt;a style="font-family: times new roman;" href="http://sti.bmj.com/cgi/content/full/83/4/253"&gt;3&lt;/a&gt;&lt;span style="font-family:times new roman;"&gt;). Rapidly then, new tests were introduced to detect the strain and subsequent changes of laboratory routines in Sweden restored normal &lt;/span&gt;&lt;span style="font-style: italic;font-family:times new roman;" &gt;C.trachomatis &lt;/span&gt;&lt;span style="font-family:times new roman;"&gt; detection specificities. Thus, the problem was fixed and everyone thought the mystery was solved.&lt;/span&gt;&lt;br /&gt;&lt;br /&gt;&lt;span style="font-family:times new roman;"&gt;Not so it seems. The real mystery started when neighboring countries started looking for the variant. Since there is extensive traveling and exchange of labor between the Nordic countries it would seem only natural that the variant &lt;/span&gt;&lt;span style="font-style: italic;font-family:times new roman;" &gt;C.trachomatis &lt;/span&gt;&lt;span style="font-family:times new roman;"&gt; should spread rapidly to other countries as well.  Curiously, that did not happen. By now, there have been studies in Norway (&lt;/span&gt;&lt;a style="font-family: times new roman;" href="http://www.eurosurveillance.org/ew/2007/070301.asp#3"&gt;4&lt;/a&gt;&lt;span style="font-family:times new roman;"&gt;), Denmark (&lt;/span&gt;&lt;a style="font-family: times new roman;" href="http://www.eurosurveillance.org/em/v12n10/1210-224.asp"&gt;5&lt;/a&gt;&lt;span style="font-family:times new roman;"&gt;), England and Wales (&lt;/span&gt;&lt;a style="font-family: times new roman;" href="http://sti.bmj.com/cgi/content/abstract/84/1/29"&gt;6&lt;/a&gt;&lt;span style="font-family:times new roman;"&gt;), Ireland (&lt;/span&gt;&lt;a style="font-family: times new roman;" href="http://www.eurosurveillance.org/ew/2007/070201.asp#2"&gt;7&lt;/a&gt;&lt;span style="font-family:times new roman;"&gt;)  and the Netherlands (&lt;/span&gt;&lt;a style="font-family: times new roman;" href="http://www.eurosurveillance.org/ew/2007/070208.asp#3"&gt;8&lt;/a&gt;&lt;span style="font-family:times new roman;"&gt;). The only other countries nv&lt;/span&gt;&lt;span style="font-style: italic;font-family:times new roman;" &gt;C.trachomatis &lt;/span&gt;&lt;span style="font-family:times new roman;"&gt; was detected was Norway where two out of 47 positives had the variant (one of these was a Swedish citizen) and Denmark which had only two cases out of a total of 383 positives. The conclusion from S Hoffmann and JS Jensen (reference &lt;/span&gt;&lt;a style="font-family: times new roman;" href="http://www.eurosurveillance.org/em/v12n10/1210-224.asp"&gt;5)&lt;/a&gt;&lt;span style="font-family:times new roman;"&gt; summed it up nicely:&lt;/span&gt; &lt;blockquote style="font-family: times new roman;"&gt;"Sexually transmitted infections are unlikely to respect national borders, especially in an extended period of time. It was therefore an unexpected finding that only one case of the new CT variant was detected among 3,770 specimens tested during a five-month period. The samples were submitted from the whole of Denmark, although the majority came from the Copenhagen area. Considering the intense daily traffic between the Copenhagen area in Denmark and southern parts of Sweden, it is surprising that the spread occurred so late."&lt;/blockquote&gt;&lt;span style="font-family:times new roman;"&gt;The spread is still limited. So far (April 2008) &lt;/span&gt;&lt;span style="font-family:times new roman;"&gt;other labs in Norway have failed to find any cases at all&lt;/span&gt;&lt;span style="font-family:times new roman;"&gt;, while our laboratory (in Oslo Norway, doing more than 20 000 &lt;/span&gt;&lt;span style="font-style: italic;font-family:times new roman;" &gt;C.trachomatis &lt;/span&gt;&lt;span style="font-family:times new roman;"&gt;analyses&lt;/span&gt;&lt;span style="font-family:times new roman;"&gt; a year&lt;/span&gt;&lt;span style="font-family:times new roman;"&gt;) only rarely have cases of nv&lt;/span&gt;&lt;span style="font-style: italic;font-family:times new roman;" &gt;C.trachomatis&lt;/span&gt;&lt;span style="font-family:times new roman;"&gt; infection. Consequently, by large the nv&lt;/span&gt;&lt;span style="font-style: italic;font-family:times new roman;" &gt;C.trachomatis&lt;/span&gt;&lt;span style="font-family:times new roman;"&gt; strain remains Sweden-specific. A bug that is specific for only one given nationality is surely a novelty in epidemiology.&lt;/span&gt;  &lt;span style="font-family:times new roman;"&gt;&lt;br /&gt;&lt;br /&gt;Finding the reason seems be far off at the moment. Because: is it likely that Swedes have strong sexual preferences towards other Swedes only ? Or are there biological differences that makes Swedes more prone to nv&lt;/span&gt;&lt;span style="font-style: italic;font-family:times new roman;" &gt;C.trachomatis &lt;/span&gt;&lt;span style="font-family:times new roman;"&gt;infection ? Sexual behavior and biological signature-attributes either in the infectious agent or in the host, are usually the starting points for STD epidemiology. But in this case either scenario is unlikely. So far then, the mystery remains unsolved.&lt;/span&gt;  &lt;span style="font-family:times new roman;"&gt;&lt;br /&gt;&lt;br /&gt;The lesson learned in diagnostics however, was probably useful for future development of diagnostic tests as pointed out by Björn Hermann (reference &lt;/span&gt;&lt;a style="font-family: times new roman;" href="http://sti.bmj.com/cgi/content/full/83/4/253"&gt;3&lt;/a&gt;&lt;span style="font-family:times new roman;"&gt;)&lt;/span&gt;&lt;strong style="font-weight: normal; font-family: times new roman;"&gt;&lt;/strong&gt;&lt;span style="font-family:times new roman;"&gt;:&lt;/span&gt; &lt;blockquote style="font-family: times new roman;"&gt;   "What can we learn from the emergence of this new variant of&lt;sup&gt; &lt;/sup&gt;chlamydia? This thrilling story provides several lessons. Firstly,&lt;sup&gt; &lt;/sup&gt;how to design a diagnostic test. The new variant is a striking&lt;sup&gt; &lt;/sup&gt;example of diagnostics driven evolution that must be considered&lt;sup&gt; &lt;/sup&gt;when new methods are designed. Since routine diagnostics for&lt;sup&gt; &lt;/sup&gt;chlamydia uses high volume testing based on nucleic acid detection,&lt;sup&gt; &lt;/sup&gt;it is important that the targets used are not only conserved&lt;sup&gt; &lt;/sup&gt;genetic elements but also essential for the organism."&lt;/blockquote&gt;&lt;span style="font-family:times new roman;"&gt;Also, comfort can be taken in knowing that the variant &lt;/span&gt;&lt;span style="font-style: italic;font-family:times new roman;" &gt;C.trachomatis &lt;/span&gt;&lt;span style="font-family:times new roman;"&gt; has lost its evolutionary advantage since due to these events, diagnostics manufacturers have changed their kits to be able to detect all known variants of &lt;/span&gt;&lt;span style="font-style: italic;font-family:times new roman;" &gt;C.trachomatis. &lt;/span&gt;&lt;span style="font-family:times new roman;"&gt; And, in addition, one can hope that through this curious epidemiology event, awareness of STDs have been raised further.&lt;br /&gt;&lt;br /&gt;Constant awareness is surely needed given the continuous rise in positive &lt;/span&gt;&lt;span style="font-style: italic;font-family:times new roman;" &gt;C.trachomatis &lt;/span&gt;&lt;span style="font-family:times new roman;"&gt; cases (regardless of variant strains).&lt;/span&gt; &lt;span style="font-family:times new roman;"&gt;Unfortunately, a growing number of &lt;/span&gt;&lt;span style="font-style: italic;font-family:times new roman;" &gt;C.trachomatis&lt;/span&gt;&lt;span style="font-family:times new roman;"&gt;-cases raises the probability of other new strains emerging through natural selection. This time it was easy to adapt to the new situation by changing the diagnostic method. The next time a variant bug appears it may not be this easy to find a fix. Treating the bug and stopping its spread (to achieve eradication) is what we should aim for. This story is just another one of the many wake-up calls given to us in the fight against disease-causing microorganisms over the recent years.&lt;/span&gt;&lt;br /&gt;&lt;br /&gt;&lt;span class="Z3988" title="ctx_ver=Z39.88-2004&amp;amp;rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&amp;amp;rft.aulast=Reinton&amp;amp;rft.aufirst=Nils&amp;amp;rft.au=Nils+ Reinton&amp;amp;rft.au=Amir+Moghaddam&amp;amp;rft.title=Sciphu.com&amp;amp;rft.atitle=The+Swedish+Chlamydia+Mystery&amp;amp;rft.date=&amp;amp;rft.volume=&amp;amp;rft.issue=&amp;amp;rft.spage=&amp;amp;rft.genre=article&amp;amp;rft.id=http%3A%2F%2Fsciphu.com%2F2008%2F04%2Fswedish-chlamydia-mystery.html"&gt;&lt;/span&gt;Reinton, N., Moghaddam, A.The Swedish Chlamydia Mystery. &lt;span style="font-style: italic;"&gt;Sciphu.com&lt;/span&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/2695693265049490064-6218240521827514744?l=sciphu.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://sciphu.com/feeds/6218240521827514744/comments/default' title='Post Comments'/><link rel='replies' type='text/html' href='https://www.blogger.com/comment.g?blogID=2695693265049490064&amp;postID=6218240521827514744' title='4 Comments'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/2695693265049490064/posts/default/6218240521827514744'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/2695693265049490064/posts/default/6218240521827514744'/><link rel='alternate' type='text/html' href='http://sciphu.com/2008/05/swedish-chlamydia-mystery.html' title='The Swedish Chlamydia Mystery'/><author><name>SciPhu</name><uri>http://www.blogger.com/profile/04635296283765717517</uri><email>sciphu@sciphu.com</email><gd:extendedProperty xmlns:gd='http://schemas.google.com/g/2005' name='OpenSocialUserId' value='06865247830582507372'/></author><thr:total>4</thr:total></entry>